PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011745-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 92aa    MW: 9982.97 Da    PI: 7.5138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011745-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091658444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT+   +l+ +a + + ++   +W  Iar +g g+t +++k ++
    NNU_011745-RA 16 WTATQNKLFEKALATYDKDtpdRWQNIARAVG-GKTVEEVKRHY 58
                     ********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.4531166IPR017884SANT domain
SMARTSM007171.3E-71264IPR001005SANT/Myb domain
SuperFamilySSF466893.9E-131569IPR009057Homeodomain-like
PfamPF002499.8E-71658IPR001005SANT/Myb domain
CDDcd001678.31E-71658No hitNo description
Gene3DG3DSA:1.10.10.606.1E-61668IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASGSLSSSC SFGSGWTATQ NKLFEKALAT YDKDTPDRWQ NIARAVGGKT VEEVKRHYEI  60
LIEDLNHIES GRVPFPNYKT SGGSSGRSNG DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-36684179RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263653.14e-64PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1738e-39RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0B2RZB15e-41A0A0B2RZB1_GLYSO; DnaJ like subfamily C member 2
TrEMBLI1LJC85e-41I1LJC8_SOYBN; Uncharacterized protein
STRINGGLYMA11G12460.11e-40(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-39RAD-like 1